Daniel E Goldberg, MD, PhD

Professor of Medicine and Molecular Microbiology &
Co-Director, Division of Infectious Diseases

Dr. Goldberg joined the Division of Infectious Diseases in 1990. He received his MD/PhD degrees from Washington University, and did his internal medicine training at the Brigham and Women's Hospital in Boston. Dr. Goldberg trained in the infectious diseases fellowship program at Washington University School of Medicine, and joined the faculty after completing a post-doctoral fellowship at Rockefeller University in New York. The major focus of his research is on the biochemistry of malaria.

Research Interests

Parasites have evolved many clever ways to infect their hosts and develop within them. Study of these processes at a molecular level should lead to treatment or prevention of parasitic infections that afflict most of humanity. It will also shed light on general principles of biochemistry and cell biology. The organism we are studying in Palsmodium-falciparum, a protozoan parasite that causes malaria.

Intraerythrocytic malaria parasites degrade vast quantities of hemoglobin to provide nutrients for their growth and maturation. This process occurs in the acidic food vacuole. My laboratory has spent much effort defining the proteolytic enzymes involved, their specificities and roles in hemoglobin breakdown, and their targeting to the food vacuole. The data suggest an ordered catabolic pathway. At the top of the pathway are four aspartic proteases (plasmepsins). These enzymes make a strategic cleavage in the hemoglobin hinge region, unraveling the molecule of further proteolysis. The initial cleavage is on the globin a chain between 33Phe and 34Leu. this peptide bond is buried in the B helix of native hemoglobin. We have identified a loop in the plasmepsins that appears to be critical for gaining access to the scissile bond. Cathepsin E is a mammalian ortholog that can cleaver at the same site but only if the hemoglobin is denatured. A chimeric plasmepsin possessing the cognate loop from cathepsin E is fully active on peptides or on loosely wound hemoglobin a chains but cannot cleave native hemoglobin. We have mapped interactions of this loop with the beginning of the B helix of hemoglobin and believe that the plasmepsin loop may pry apart the helix, exposing the 33-34 bond for hydrolysis.

Since the plasmepsins are involved in the initial steps of hemoglobin degradation, they are view as attractive drug targets. To define their roles in catabolism, we have made gene disruptions in cultured intraerythrocytic parasites. Knockout of any of the plasmepsins gave a minimal growth phenotype. It occurred to us that the standard growth medium we all use to grow parasites, RPMI 1640, has 5- to 20-fold higher amino acid concentrations than those found in normal human blood and hugely higher concentrations than those found in malnourished children, who are the most likely victims of the disease and in whom plasma amino acid levels can be undetectable. To investigate this further, we tried growing parasites in amino acid-limited conditions and found that P falciparum grows well in modified RPMI medium lacking all amino acids except isoleucine (which is absent from human hemoglobin). Some isolates also require exogenous methionine for optimal growth. When we tested our knockout closed in amino acid-deficient medium, we found substantial growth phenotypes. These results suggest that P facliparum has obtained a growth advantage through plasmepsin gene duplication (other malaria species have a single gene) and explain why it has maintained four enzymes with overlapping function. in addition, there is functional overlap between the plasmepsins and falcipains, a group of food vacuole cysteine proteases. The data tell us as well that hemoglobin degradation is sufficient to supply nearly all of the parasite's amino acid requirements.

The biosynthesis of the aspartic proteases appears to involve targeting to the parasite surface as integral membrane proenzymes and then ingestion with their substrate hemoglobin. Once the plasmepsin precursors reach the food vacuole, they are cleaved from the membrane after a conserved sequence at the plasmepsin pro-mature junction, by the falcipains. If falcipain activity is inhibited, the plasmepsins can mature by autoprocessing, another example of redundancy between these two families of proteases.

Since isoleucine is the sole exogenous amino acid required, we are interested in the parasite's isoluecine acquisition machinery. We are using genetic approaches to identify the isoleucine transporter and are studying the isoleucy1 tRNA synthetases that charge tRNA with the cognate amino acid. We have found that the antibacterial agent mupirocin kills parasites in the low nanomolar range and targets the apicoplast tRNA synthetase selectively. Blocking isoleucine incorporation in the cytoplasm does not kill parasites, but rather initiates a eIF2alpha-mediated signaling process that tells the cell it has run out of isoleucy1 tRNA and causes the organism to stall and wait for more nutrient. In contrast, blocking organellar incorporation does not generate signaling and the parasites die.

Another protease of interest to our lab is Plasmodium calpain P. falciparum has a single calpain gene. Phylogenetic analysis reveals that the encoded protein (Pfcalpain) has a distinct domain structure found only in Apicomplexa and some other alveolates. To evaluate the potential of Pf calpain as a drug target, we assess its essentiality. We were unable to achieve gene disruption by double-crossover recombination and failed to achieve gene truncation by single-crossover recombination. We were unable to achieve allelic replacement by using a missense mutation at the catalytic cysteine codon, although we obtained synonomous allelic replacement parasites. These results suggested that the calpain gene and its proteolytic activity are likely to be important for optimal parasite growth but give no indication of a biological role for this gene. To gain further insight we used a FKBP degradation domain system to generate fusion proteins whose levels in transfected parasites could be modulated by a small molecule FKBP ligand, Shld1. We made a calpain-FKBP fusion by single-crossover integration at the endogenous calpain locue. Parasite growth was normal in the presence of Shld1 but was greatly impaired in the absence of ligand. Parasites were delayed in transitioning out of the ring stage. This is the first regulated knockdown of a Plasmodium gene. further clues to function come from localization studies showing concentration of Pf calpain in the nucleolus and regulation of targeting by palmitoylation. We identified a small sequence capable of targeting reporters to the nucleolus of Plasmodium or mammalian cells. Pf calpain is a novel nucleolar protease required for cell cycle progression, it appears to be an attractive drug target. Once intraerythrocytic malaria parasites mature and replicate, they must exit the host cell to infect new erythrocytes. We have found that this is a two step process. The parasites must escape from the host erythrocyte but must also get out of their own parasitophorous vacuolar membrane. Both processes involve specific proteolytic events. Further studies focus on characterization of the implicated enzymes. Protease inhibitors block the escape and multiplication of the organism, suggesting that this is an attractive chemotherapeutic target.

Our work involves a combination of biochemical, genetic, genomic, and physiological approaches aimed at understanding the biology of this nefarious organism.

Biographical Sketch

Link to Medline for selected publications

Office Location:
Washington University School of Medicine
9210 McDonnell Pediatric Research Building
St. Louis, MO 63110

Telephone: (314) 362-1514
Lab: (314) 362-4779, 362-4780, 362-4790
Fax: (314) 367-3214
Email: goldberg@borcim.wustl.edu